It is not a prior. It is the posterior of trajectory and controls. Basically that equation gives you the motion model of the robot similar to the motion models described in Sebastian Thrun's Probabilistic Robotics. $x_{0:t}$ is a set of poses i.e., trajectory and $u_{0:t}$ is a set of controls, i.e., Motor commands for the joints. The posterior here provides a likelihood estimate of the robot's pose after a control command. From what I understand after skimming through the rather obscure paper and another paper Robot Trajectory Optimization using Approximate Inference that the LHS is used to compute a likelihood for the next pose, $x_{t+1}$ if a control action $u_t$ is chosen with the knowledge of $x_t$. The LHS can be viewed as described in the Background section below. From the latter paper, the estimation of state $x_{t+1}$ requires some confidence on the knowledge of current state $x_t$ which is given by the covariance matrix $A$ and mean $a$.
Background:
$p(x_{0:t},u_{0:t})$ is called a state transition probability, it can also be written as $p(x_{t}|x_{0:t-1}, u_{0:t})$ since it can be assumed that $x_t$ is a complete state or here just the pose of the robot, i.e. it is a summary of all that happened in the past poses after executing commands in the set $u_{1:t}$. What this results in is that $x_t$ is conditional stochastically on $x_{t-1}$ and can be estimated by executing the command $u_t$. Which is what the motion model does for you and it is shown as $p(x_t|u_t, x_{t-1})$. It says that the state $x_t$ depends on $u_t$ and can be computed as long as $x_{t-1}$ is known.