I still couldn't derive it, but maybe I could prove it thanks to willSapgreen.
Information matrix of distribution $p(x_t, Y^+, Y^0|Y^-=0)$ is $H_t'$;
$$H_t'=S_{x_t,Y^+,Y^0}S^T_{x_t,Y^+,Y^0}H_tS^T_{x_t,Y^+,Y^0}S_{x_t,Y^+,Y^0}$$
This matrix can be written as
$$H_t' = \left(\begin{array}{cc}
H_{x_t,Y^+,x_t,Y^+}&H_{x_t,Y^+,Y^0}\\H_{Y^0,x_t,Y^+}&H_{Y^0,Y^0}
\end{array}\right)\tag{1}$$
Information matrix of marginal distribution $p(x_t, Y^+|Y^-=0)$ is as follows. Note that dimension of $\tilde{H}_{x_t,Y^+,x_t,Y^+}$ is $3n\times3n$ where $n$ is the number of active features that we are going to inactivate.
$$\tilde{H}_{x_t,Y^+,x_t,Y^+}=H_{x_t,Y^+,x_t,Y^+}-H_{x_t,Y^+,Y^0}H^{-1}_{Y^0,Y^0}H_{Y^0,x_t,Y^+}$$
What we need as $H_t^1$ should be as follows. Note that dimension of $H_t^1$ is $3(N+1)\times3(N+1)$ where dimension of $x_t$ is $1\times3$ and $N$ is the number of all features($Y^+,Y^0,Y^-$), and $"0"$ here means zero matrix that has appropriate dimension.
$$H_t^1 = \left(\begin{array}{cc}
\tilde{H}_{x_t,Y^+,x_t,Y^+}&0\\0&0
\end{array}\right)\tag{2}$$
If we calculate equation(38) with using elements of (1), then
$$\begin{align}
H_t'&-H_t'S_{Y^0}(S_{Y^0}^TH_t'S_{Y^0})^{-1}S_{Y^0}^TH_t' \\
&=
\left(\begin{array}{cc}
H_{x_t,Y^+,x_t,Y^+}&H_{x_t,Y^+,Y^0}\\H_{Y^0,x_t,Y^+}&H_{Y^0,Y^0}
\end{array}\right)-
\left(\begin{array}{c}H_{x_t,Y^+,Y^0}\\H_{Y^0,Y^0}\end{array}\right)
H_{Y^0,Y^0}^{-1}
\left(\begin{array}{cc}H_{x_t,Y^+,x_t,Y^+}&H_{x_t,Y^+,Y^0}\end{array}\right)
\\
&=
\left(\begin{array}{cc}
H_{x_t,Y^+,x_t,Y^+}&H_{x_t,Y^+,Y^0}\\H_{Y^0,x_t,Y^+}&H_{Y^0,Y^0}
\end{array}\right)-
\left(\begin{array}{cc}
H_{x_t,Y^+,x_t,Y^+}H_{Y^0,Y^0}^{-1}H_{Y^0,x_t,Y^+}&H_{x_t,Y^+,Y^0}\\H_{Y^0,x_t,Y^+}&H_{Y^0,Y^0}
\end{array}\right)\\
&=
\left(\begin{array}{cc}\tilde{H}_{x_t,Y^+,x_t,Y^+}&0\\0&0\end{array}\right)\\
&=H_t^1
\end{align}$$
Equation (38) can be equalled with (2).
This is not exactly the answer to what I questioned, but this is ok for me.